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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
DNase-seq
35
ChIP-seq
6
single cell RNA-seq
2
ATAC-seq
Assay category
173
DNA accessibility
35
DNA binding
6
Transcription
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
160
June, 2019
26
August, 2017
9
November, 2018
6
February, 2021
6
November, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
1820
bam
1702
bigWig
1062
tsv
884
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
208
Homo sapiens
Biosample type
214
tissue
59
cell line
39
primary cell
1
in vitro differentiated cells
Organ
73
kidney
45
musculature of body
36
brain
36
limb
27
heart
20
pancreas
18
ureter
5
blood vessel
vasculature
4
artery
4
liver
3
adipose tissue
3
connective tissue
3
eye
2
nerve
1
spleen
Project
214
AMP
Genome assembly (visualization)
191
hg19
186
GRCh38
Lab
212
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
audit script error
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
214 results
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DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
heart
18
kidney
13
5
brain
14
3
muscle of arm
17
muscle of leg
13
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