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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
Assay category
99
DNA binding
Target of assay
100
histone modification
99
histone
79
transcription factor
67
control
59
broad histone mark
40
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
59
August, 2017
16
October, 2018
7
October, 2017
6
January, 2019
6
November, 2017
5
December, 2017
Available data
521
bigWig
519
bed narrowPeak
465
bam
312
bigBed narrowPeak
186
tagAlign
73
fastq
35
bed broadPeak
12
bed bed3+
1
tagAlign bed3+
Organism
93
Homo sapiens
Biosample type
99
tissue
75
primary cell
65
in vitro differentiated cells
16
cell line
2
stem cell
Organ
48
pancreas
17
liver
13
brain
13
musculature of body
6
spleen
2
adipose tissue
2
connective tissue
Project
99
AMP
Genome assembly (visualization)
98
hg19
77
GRCh38
Lab
99
AMP-T2D consortium
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2020
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
tissue
islet of Langerhans
20
body of pancreas
16
skeletal muscle tissue
13
liver
12
pancreas
12
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