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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
29
ChIP-seq
2
ATAC-seq
Assay category
178
DNA accessibility
29
DNA binding
Target of assay
29
histone
29
histone modification
18
broad histone mark
11
narrow histone mark
Date released
163
June, 2019
26
August, 2017
9
November, 2018
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1838
bam
1715
bigWig
1076
tsv
926
bed narrowPeak
504
bigBed narrowPeak
377
fastq
207
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
172
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
0
hdf5
Organism
201
Homo sapiens
Biosample type
207
tissue
47
primary cell
2
cell line
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
limb
30
brain
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
3
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
207
AMP
Genome assembly (visualization)
190
hg19
186
GRCh38
Lab
205
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
November, 2017
BIOSAMPLE
ASSAY
207 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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