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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
DNase-seq
35
ChIP-seq
2
ATAC-seq
Assay category
171
DNA accessibility
35
DNA binding
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
160
June, 2019
26
August, 2017
9
November, 2018
6
November, 2017
4
October, 2017
October, 2019
1
March, 2019
Available data
1660
bam
1563
bigWig
1054
tsv
754
bed narrowPeak
472
bigBed narrowPeak
377
fastq
206
bed broadPeak
198
bed bed3+
189
tagAlign
169
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
200
Homo sapiens
Biosample type
206
tissue
58
cell line
41
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
brain
32
limb
27
heart
20
pancreas
18
ureter
3
adipose tissue
blood vessel
3
connective tissue
3
eye
3
liver
3
vasculature
2
artery
1
spleen
Project
206
AMP
Genome assembly (visualization)
189
hg19
184
GRCh38
Lab
204
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
October, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
206 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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