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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 176DNase-seq
  • 35ChIP-seq
  • 2ATAC-seq
Assay category
  • 178DNA accessibility
  • 35DNA binding
Target of assay
  • 35histone
  • 35histone modification
  • 20broad histone mark
  • 15narrow histone mark
Date released
  • 163June, 2019
  • 26August, 2017
  • 9November, 2018
  • 6November, 2017
  • 4October, 2017
  • 4October, 2019
  • 1March, 2019
Available data
  • 1907bam
  • 1772bigWig
  • 1076tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 207Homo sapiens
Biosample type
  • 213tissue
  • 59cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 68kidney
  • 45musculature of body
  • 36brain
  • 36limb
  • 27heart
  • 20pancreas
  • 18ureter
  • 5blood vessel
  • 5vasculature
  • 4artery
  • 3adipose tissue
  • 3connective tissue
  • 3eye
  • 3liver
  • 2nerve
  • 1spleen
Project
  • 213AMP
Genome assembly (visualization)
  • 196hg19
  • 191GRCh38
Lab
  • 211AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

213 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
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