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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
62
ChIP-seq
Assay category
100
DNA accessibility
62
DNA binding
Target of assay
57
histone
57
histone modification
32
broad histone mark
25
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
64
August, 2021
40
May, 2024
20
August, 2017
20
May, 2022
16
February, 2023
1
April, 2019
1
November, 2017
Available data
bam
1702
bigWig
1059
tsv
872
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
162
Homo sapiens
Biosample type
162
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
76
heart
64
kidney
35
artery
35
blood vessel
vasculature
27
eye
20
liver
13
musculature of body
epithelium
6
pancreas
2
adipose tissue
2
connective tissue
1
brain
Project
162
AMP
Genome assembly (visualization)
104
GRCh38
58
hg19
Lab
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
38
AMP-T2D consortium
20
Karen Mohlke, UNC
files.file_type!
bam
organ_slims!
epithelium
vasculature
BIOSAMPLE
ASSAY
162 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
liver
20
retina
15
skeletal muscle tissue
13
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