Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
575
ChIP-seq
144
ATAC-seq
109
DNase-seq
3
FAIRE-seq
Assay category
575
DNA binding
256
DNA accessibility
Target of assay
500
histone modification
499
histone
256
narrow histone mark
243
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
149
October, 2019
95
June, 2019
93
May, 2019
66
August, 2017
63
February, 2023
58
November, 2017
47
April, 2019
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
6
January, 2019
6
July, 2019
3
December, 2018
2
March, 2020
Available data
1809
bam
1681
bigWig
tsv
831
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
825
Homo sapiens
Biosample type
831
tissue
396
cell line
273
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
kidney
123
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
829
AMP
2
T1D
Genome assembly (visualization)
731
GRCh38
689
hg19
Lab
753
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
organ_slims!
kidney
BIOSAMPLE
ASSAY
831 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
body of pancreas
26
4
4
+ See 122 more…
See all biosamples
Download