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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
574
ChIP-seq
208
ATAC-seq
145
DNase-seq
4
FAIRE-seq
Assay category
574
DNA binding
357
DNA accessibility
Target of assay
501
histone modification
500
histone
259
narrow histone mark
241
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
Date released
151
October, 2019
131
June, 2019
87
May, 2019
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
53
August, 2017
45
October, 2018
40
May, 2024
38
May, 2022
34
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1861
bam
1713
bigWig
1069
tsv
931
bed narrowPeak
521
bigBed narrowPeak
373
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
925
Homo sapiens
Biosample type
931
tissue
374
cell line
285
primary cell
129
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
123
pancreas
111
liver
100
blood vessel
100
vasculature
92
limb
62
artery
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
929
AMP
2
T1D
Genome assembly (visualization)
844
GRCh38
724
hg19
Lab
789
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
25
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
zippedFastqFolder
organ_slims!
musculature of body
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
931 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
80
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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