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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
588
ChIP-seq
204
ATAC-seq
175
DNase-seq
4
FAIRE-seq
1
Hi-C
Assay category
588
DNA binding
383
DNA accessibility
1
3D chromatin structure
Target of assay
518
histone modification
517
histone
264
narrow histone mark
253
broad histone mark
70
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
162
June, 2019
151
October, 2019
93
May, 2019
65
April, 2019
64
August, 2021
63
August, 2017
62
February, 2023
58
November, 2017
40
May, 2024
40
October, 2018
38
May, 2022
36
December, 2017
27
May, 2020
19
November, 2019
16
November, 2018
11
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
1
March, 2019
Available data
1293
bam
1175
bigWig
971
bed narrowPeak
551
bigBed narrowPeak
503
tsv
332
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
966
Homo sapiens
Biosample type
972
tissue
404
cell line
278
primary cell
87
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
124
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
970
AMP
2
T1D
Genome assembly (visualization)
872
GRCh38
765
hg19
Lab
829
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2018
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
972 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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