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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
597
ChIP-seq
327
total RNA-seq
210
ATAC-seq
175
DNase-seq
14
WGBS
14
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
597
DNA binding
389
DNA accessibility
347
Transcription
14
DNA methylation
Target of assay
521
histone modification
520
histone
266
narrow histone mark
254
broad histone mark
76
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
170
May, 2020
162
June, 2019
161
August, 2017
159
October, 2019
July, 2018
93
May, 2019
65
April, 2019
64
August, 2021
62
February, 2023
58
November, 2017
53
July, 2019
40
May, 2024
40
October, 2018
38
May, 2021
38
May, 2022
38
November, 2019
36
December, 2017
22
November, 2018
13
October, 2017
11
March, 2020
8
February, 2021
6
April, 2018
6
January, 2019
3
December, 2018
1
January, 2018
Available data
1293
bam
1175
bigWig
971
bed narrowPeak
551
bigBed narrowPeak
503
tsv
332
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1341
Homo sapiens
Biosample type
1347
tissue
550
primary cell
532
cell line
219
in vitro differentiated cells
3
stem cell
Organ
connective tissue
425
adipose tissue
294
pancreas
265
liver
203
brain
192
heart
155
kidney
105
blood vessel
105
vasculature
97
limb
66
bone element
62
artery
57
musculature of body
31
nerve
30
eye
18
ureter
16
spleen
12
epithelium
8
skeleton
1
pituitary gland
Project
1345
AMP
2
T1D
Genome assembly (visualization)
1245
GRCh38
1124
hg19
Lab
1204
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2018
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1347 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
liver
82
147
20
2
1
islet of Langerhans
29
144
40
1
6
1
kidney
20
64
13
1
coronary artery
3
36
2
left cardiac atrium
40
1
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