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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
538
ChIP-seq
172
DNase-seq
170
ATAC-seq
10
Hi-C
4
FAIRE-seq
Assay category
538
DNA binding
346
DNA accessibility
10
3D chromatin structure
Target of assay
466
histone modification
465
histone
248
narrow histone mark
217
broad histone mark
72
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
160
June, 2019
131
October, 2019
66
August, 2017
65
April, 2019
65
August, 2021
58
November, 2017
54
May, 2019
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
28
February, 2023
27
May, 2020
21
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
8
March, 2020
6
January, 2019
5
July, 2019
3
December, 2018
1
March, 2019
Available data
1820
bam
1702
bigWig
1062
tsv
884
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
888
Homo sapiens
Biosample type
894
tissue
394
cell line
278
primary cell
136
in vitro differentiated cells
2
stem cell
Organ
192
brain
176
heart
154
kidney
126
pancreas
114
liver
101
blood vessel
vasculature
92
limb
62
artery
53
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
892
AMP
2
T1D
Genome assembly (visualization)
783
GRCh38
722
hg19
Lab
750
AMP-T2D consortium
65
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
lymph node
vasculature
BIOSAMPLE
ASSAY
894 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
tissue
liver
82
2
20
1
kidney
20
13
64
1
1
islet of Langerhans
20
1
37
2
1
left cardiac atrium
40
1
heart left ventricle
29
3
2
1
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