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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
688
ChIP-seq
208
ATAC-seq
177
DNase-seq
4
FAIRE-seq
Assay category
688
DNA binding
389
DNA accessibility
Target of assay
561
histone modification
560
histone
283
narrow histone mark
277
broad histone mark
75
transcription factor
52
control
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
160
October, 2019
99
August, 2017
93
May, 2019
78
November, 2017
65
April, 2019
64
August, 2021
63
February, 2023
50
May, 2020
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
20
November, 2019
20
October, 2017
17
November, 2018
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1907
bam
1772
bigWig
1074
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1070
Homo sapiens
Biosample type
1077
tissue
410
cell line
297
primary cell
154
in vitro differentiated cells
2
stem cell
Organ
227
brain
173
heart
156
liver
153
kidney
127
pancreas
100
blood vessel
100
vasculature
92
limb
62
artery
53
musculature of body
30
eye
27
nerve
20
adipose tissue
20
connective tissue
18
ureter
14
spleen
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
1075
AMP
2
T1D
Genome assembly (visualization)
883
GRCh38
777
hg19
Lab
935
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
organ_slims!
intestine
BIOSAMPLE
ASSAY
1077 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
125
20
2
kidney
20
64
13
1
islet of Langerhans
23
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
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