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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
588
ChIP-seq
204
ATAC-seq
13
DNase-seq
4
FAIRE-seq
Assay category
588
DNA binding
221
DNA accessibility
Target of assay
518
histone modification
517
histone
264
narrow histone mark
253
broad histone mark
70
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
June, 2019
151
October, 2019
93
May, 2019
65
April, 2019
64
August, 2021
63
August, 2017
62
February, 2023
58
November, 2017
40
May, 2024
40
October, 2018
38
May, 2022
36
December, 2017
27
May, 2020
19
November, 2019
16
November, 2018
11
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1305
bam
1187
bigWig
809
bed narrowPeak
677
tsv
389
bigBed narrowPeak
334
fastq
230
tagAlign
157
txt
64
xls
48
bed broadPeak
37
bed bed3+
23
bed bedMethyl
23
bigBed bedMethyl
12
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
803
Homo sapiens
Biosample type
809
tissue
404
cell line
248
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
167
brain
146
heart
119
pancreas
113
liver
97
blood vessel
97
vasculature
85
kidney
60
artery
60
limb
27
eye
27
nerve
19
musculature of body
14
spleen
adipose tissue
12
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
807
AMP
2
T1D
Genome assembly (visualization)
710
GRCh38
618
hg19
Lab
667
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
month_released!
June, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
809 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
1
islet of Langerhans
20
37
1
1
left cardiac atrium
40
coronary artery
3
36
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