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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
522
ChIP-seq
170
DNase-seq
159
ATAC-seq
2
FAIRE-seq
Assay category
522
DNA binding
331
DNA accessibility
Target of assay
458
histone modification
457
histone
240
narrow histone mark
217
broad histone mark
64
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
159
June, 2019
151
October, 2019
92
May, 2019
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
40
May, 2024
36
December, 2017
34
August, 2017
27
May, 2020
20
May, 2022
14
November, 2018
February, 2021
8
October, 2017
7
July, 2019
6
January, 2019
5
October, 2018
3
December, 2018
1
November, 2019
Available data
1026
bam
955
bigWig
853
bed narrowPeak
499
bigBed narrowPeak
349
tsv
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
64
xls
62
txt
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
bed bed3
1
tagAlign bed3+
Organism
853
Homo sapiens
Biosample type
853
tissue
369
cell line
226
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
pancreas
113
liver
100
blood vessel
100
vasculature
86
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
1
pituitary gland
Project
853
AMP
Genome assembly (visualization)
778
GRCh38
648
hg19
Lab
729
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
February, 2021
organ_slims!
pancreas
BIOSAMPLE
ASSAY
853 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
82
2
20
kidney
20
13
64
1
coronary artery
3
2
36
left cardiac atrium
40
1
heart left ventricle
29
3
2
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