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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
575
ChIP-seq
109
DNase-seq
81
ATAC-seq
3
FAIRE-seq
Assay category
575
DNA binding
193
DNA accessibility
Target of assay
500
histone modification
499
histone
256
narrow histone mark
243
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
149
October, 2019
95
June, 2019
93
May, 2019
66
August, 2017
February, 2023
58
November, 2017
47
April, 2019
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
6
January, 2019
6
July, 2019
3
December, 2018
2
March, 2020
Available data
1809
bam
1681
bigWig
1060
tsv
768
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
91
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
1
bedpe
1
csv
1
tagAlign bed3+
Organism
762
Homo sapiens
Biosample type
768
tissue
396
cell line
273
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
192
brain
kidney
138
heart
123
pancreas
113
liver
92
limb
65
blood vessel
65
vasculature
51
musculature of body
27
artery
27
nerve
18
ureter
14
spleen
12
adipose tissue
12
connective tissue
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
766
AMP
2
T1D
Genome assembly (visualization)
696
GRCh38
661
hg19
Lab
690
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
organ_slims!
kidney
BIOSAMPLE
ASSAY
768 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
82
2
20
islet of Langerhans
20
1
37
1
left cardiac atrium
40
1
body of pancreas
26
4
4
heart left ventricle
29
3
2
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