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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
538
ChIP-seq
172
DNase-seq
150
ATAC-seq
4
FAIRE-seq
Assay category
538
DNA binding
326
DNA accessibility
Target of assay
466
histone modification
465
histone
248
narrow histone mark
217
broad histone mark
72
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
160
June, 2019
130
October, 2019
66
August, 2017
65
April, 2019
64
August, 2021
58
November, 2017
54
May, 2019
45
October, 2018
40
May, 2024
38
May, 2022
36
December, 2017
28
February, 2023
27
May, 2020
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
6
January, 2019
5
July, 2019
3
December, 2018
2
March, 2020
Available data
1781
bam
1683
bigWig
1043
tsv
864
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
858
Homo sapiens
Biosample type
864
tissue
380
cell line
274
primary cell
127
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
113
liver
104
pancreas
100
blood vessel
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
12
adipose tissue
12
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
862
AMP
2
T1D
Genome assembly (visualization)
763
GRCh38
692
hg19
Lab
722
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
864 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
82
2
20
kidney
20
13
64
1
left cardiac atrium
40
1
islet of Langerhans
20
1
18
1
body of pancreas
26
4
4
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