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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
502
ChIP-seq
103
ATAC-seq
102
DNase-seq
1
FAIRE-seq
Assay category
502
DNA binding
206
DNA accessibility
Target of assay
438
histone modification
437
histone
230
narrow histone mark
207
broad histone mark
64
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
149
October, 2019
92
May, 2019
91
June, 2019
63
February, 2023
58
November, 2017
47
April, 2019
40
May, 2024
36
December, 2017
34
August, 2017
27
May, 2020
20
May, 2022
14
November, 2018
8
February, 2021
8
October, 2017
6
January, 2019
6
July, 2019
5
October, 2018
3
December, 2018
1
November, 2019
Available data
1380
bam
1308
bigWig
788
tsv
708
bed narrowPeak
412
bigBed narrowPeak
222
tagAlign
164
fastq
125
bed broadPeak
110
bed bed3+
102
bigBed broadPeak
89
txt
18
bed bedMethyl
18
bigBed bedMethyl
7
bedpe bed3+
7
hic
5
bed bed3
1
csv
1
tagAlign bed3+
Organism
708
Homo sapiens
Biosample type
708
tissue
375
cell line
205
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
kidney
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
708
AMP
Genome assembly (visualization)
634
GRCh38
568
hg19
Lab
648
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
gonad
kidney
pancreas
BIOSAMPLE
ASSAY
708 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
coronary artery
3
36
2
left cardiac atrium
40
1
heart left ventricle
29
2
3
heart
12
18
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