Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ATAC-seq
177
DNase-seq
75
ChIP-seq
4
FAIRE-seq
Assay category
389
DNA accessibility
75
DNA binding
Target of assay
histone modification
513
histone
264
narrow histone mark
249
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
64
August, 2021
63
February, 2023
38
May, 2022
31
December, 2017
20
November, 2019
17
November, 2018
15
October, 2018
9
August, 2017
8
February, 2021
7
July, 2019
6
October, 2017
6
October, 2019
5
April, 2019
5
May, 2024
4
May, 2019
3
December, 2018
Available data
1440
bam
1250
bigWig
1075
tsv
464
bed narrowPeak
302
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
51
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
464
Homo sapiens
Biosample type
464
tissue
369
cell line
79
primary cell
54
in vitro differentiated cells
Organ
133
kidney
78
heart
63
liver
61
pancreas
46
blood vessel
46
vasculature
44
limb
42
artery
32
musculature of body
30
eye
28
brain
18
ureter
12
epithelium
11
adipose tissue
11
connective tissue
8
bone element
8
skeleton
8
spleen
3
nerve
Project
464
AMP
Genome assembly (visualization)
394
GRCh38
344
hg19
Lab
357
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
organ_slims!
large intestine
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
464 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
ChIP-seq
FAIRE-seq
tissue
kidney
64
13
1
liver
20
2
37
islet of Langerhans
37
1
1
1
coronary artery
36
2
1
heart
18
+ See 53 more…
See all biosamples
Download