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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 595ChIP-seq
  • 208ATAC-seq
  • 177DNase-seq
  • 4FAIRE-seq
Assay category
  • 595DNA binding
  • 389DNA accessibility
Target of assay
  • 520histone modification
  • 519histone
  • 266narrow histone mark
  • 253broad histone mark
  • 75transcription factor
  • 26RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 163June, 2019
  • 151October, 2019
  • 93May, 2019
  • 66August, 2017
  • 65April, 2019
  • 64August, 2021
  • 63February, 2023
  • 58November, 2017
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 36December, 2017
  • 27May, 2020
  • 20November, 2019
  • 17November, 2018
  • 12October, 2017
  • 8February, 2021
  • 7July, 2019
  • 6January, 2019
  • 3December, 2018
  • 2March, 2020
Available data
  • 1907bam
  • 1772bigWig
  • 1076tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 978Homo sapiens
Biosample type
  • 984tissue
  • 404cell line
  • 295primary cell
  • 132in vitro differentiated cells
  • 2stem cell
Organ
  • 192brain
  • 173heart
  • 153kidney
  • 123pancreas
  • 113liver
  • 100blood vessel
  • 100vasculature
  • 92limb
  • 62artery
  • 51musculature of body
  • 30eye
  • 27nerve
  • 18ureter
  • 14spleen
  • 13adipose tissue
  • 13connective tissue
  • 12epithelium
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 982AMP
  • 2T1D
Genome assembly (visualization)
  • 883GRCh38
  • 777hg19
Lab
  • 842AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 18Kyle Gaulton, UCSD
Audit category:
  • 27inconsistent control
  • 4inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

984 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver82202
kidney2064131
islet of Langerhans203711
coronary artery3362
left cardiac atrium401
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