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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
332
ChIP-seq
177
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
332
DNA binding
184
DNA accessibility
Target of assay
282
histone
282
histone modification
185
broad histone mark
97
narrow histone mark
50
transcription factor
9
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
93
May, 2019
64
April, 2019
57
November, 2017
47
October, 2019
October, 2018
36
December, 2017
22
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1833
bam
1727
bigWig
1076
tsv
939
bed narrowPeak
516
bigBed narrowPeak
319
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
510
Homo sapiens
Biosample type
516
tissue
355
cell line
109
primary cell
17
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
62
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
22
pancreas
18
ureter
13
spleen
5
adipose tissue
5
connective tissue
3
eye
Project
516
AMP
Genome assembly (visualization)
510
GRCh38
448
hg19
Lab
516
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
April, 2020
October, 2018
BIOSAMPLE
ASSAY
516 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
tibial nerve
24
2
heart
7
18
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