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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
302
ChIP-seq
171
DNase-seq
3
FAIRE-seq
1
ATAC-seq
Assay category
302
DNA binding
175
DNA accessibility
Target of assay
240
histone
240
histone modification
156
broad histone mark
84
narrow histone mark
62
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
160
June, 2019
64
April, 2019
57
November, 2017
54
May, 2019
45
October, 2018
36
December, 2017
27
October, 2019
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1650
bam
1524
bigWig
973
tsv
818
bed narrowPeak
477
bigBed narrowPeak
202
fastq
182
bed broadPeak
179
tagAlign
174
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
477
Homo sapiens
Biosample type
477
tissue
355
cell line
69
primary cell
16
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
vasculature
48
pancreas
43
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
8
adipose tissue
8
connective tissue
3
eye
Project
477
AMP
Genome assembly (visualization)
472
GRCh38
409
hg19
Lab
477
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
organ_slims!
lymph node
vasculature
BIOSAMPLE
ASSAY
477 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
33
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
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