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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
320
ChIP-seq
169
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
320
DNA binding
176
DNA accessibility
Target of assay
258
histone
258
histone modification
168
broad histone mark
90
narrow histone mark
62
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
157
June, 2019
64
April, 2019
57
November, 2017
54
May, 2019
45
October, 2018
36
December, 2017
27
October, 2019
22
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1817
bam
1699
bigWig
1057
tsv
854
bed narrowPeak
496
bigBed narrowPeak
377
fastq
238
tagAlign
205
bed broadPeak
197
bed bed3+
168
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
490
Homo sapiens
Biosample type
496
tissue
355
cell line
85
primary cell
17
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
62
pancreas
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
eye
Project
496
AMP
Genome assembly (visualization)
490
GRCh38
428
hg19
Lab
496
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
eye
vasculature
BIOSAMPLE
ASSAY
496 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
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