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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
ChIP-seq
140
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
314
DNA binding
147
DNA accessibility
Target of assay
252
histone
252
histone modification
164
broad histone mark
88
narrow histone mark
62
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
128
June, 2019
64
April, 2019
57
November, 2017
48
May, 2019
45
October, 2018
36
December, 2017
27
October, 2019
22
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1776
bam
1645
bigWig
1055
tsv
833
bed narrowPeak
461
bigBed narrowPeak
375
fastq
223
tagAlign
167
bed bed3+
163
bed broadPeak
156
txt
139
bigBed broadPeak
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
455
Homo sapiens
Biosample type
461
tissue
355
cell line
79
primary cell
17
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
62
pancreas
vasculature
49
liver
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
461
AMP
Genome assembly (visualization)
456
GRCh38
393
hg19
Lab
461
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
vasculature
BIOSAMPLE
ASSAY
461 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
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