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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
165
DNase-seq
3
ATAC-seq
2
FAIRE-seq
Assay category
267
DNA binding
170
DNA accessibility
Target of assay
215
histone
215
histone modification
141
broad histone mark
74
narrow histone mark
52
transcription factor
11
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
156
June, 2019
64
April, 2019
57
November, 2017
53
May, 2019
36
December, 2017
27
October, 2019
14
November, 2018
8
August, 2017
6
January, 2019
6
October, 2017
5
October, 2018
3
December, 2018
2
July, 2019
Available data
1391
bam
1329
bigWig
787
tsv
761
bed narrowPeak
437
bigBed narrowPeak
222
tagAlign
188
bed broadPeak
173
bed bed3+
165
bigBed broadPeak
164
fastq
151
txt
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
7
hic
6
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
437
Homo sapiens
Biosample type
437
tissue
348
cell line
66
primary cell
17
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
pancreas
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
437
AMP
Genome assembly (visualization)
433
GRCh38
371
hg19
Lab
437
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
pancreas
vasculature
BIOSAMPLE
ASSAY
437 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
tibial nerve
24
2
heart
7
18
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