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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
66
DNase-seq
3
FAIRE-seq
Assay category
147
DNA binding
69
DNA accessibility
Target of assay
137
histone
137
histone modification
89
broad histone mark
48
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
61
June, 2019
57
November, 2017
40
October, 2018
32
May, 2019
14
August, 2017
6
October, 2017
5
November, 2018
1
July, 2019
Available data
699
bam
632
bigWig
366
bed narrowPeak
305
tsv
227
fastq
216
bigBed narrowPeak
149
tagAlign
101
bed broadPeak
87
bed bed3+
65
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
7
txt
5
bedpe bed3+
5
hic
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
210
Homo sapiens
Biosample type
216
tissue
42
primary cell
7
cell line
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
62
pancreas
62
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
216
AMP
Genome assembly (visualization)
212
GRCh38
152
hg19
Lab
216
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
26
4
brain
6
14
muscle of leg
6
13
muscle of arm
17
layer of hippocampus
16
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