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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 377ChIP-seq
  • 177DNase-seq
  • 4FAIRE-seq
  • 3ATAC-seq
Assay category
  • 377DNA binding
  • 184DNA accessibility
Target of assay
  • 312histone
  • 312histone modification
  • 204broad histone mark
  • 108narrow histone mark
  • 65transcription factor
  • 20RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 163June, 2019
  • 93May, 2019
  • 64April, 2019
  • 57November, 2017
  • 47October, 2019
  • 45October, 2018
  • 36December, 2017
  • 22August, 2017
  • 17November, 2018
  • 6January, 2019
  • 6October, 2017
  • 3December, 2018
  • 2July, 2019
Available data
  • 1907bam
  • 1772bigWig
  • 1077tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 206bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
Organism
  • 555Homo sapiens
Biosample type
  • 561tissue
  • 355cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 116brain
  • 88heart
  • 87kidney
  • 84limb
  • 62blood vessel
  • 62pancreas
  • 62vasculature
  • 49liver
  • 38musculature of body
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 10adipose tissue
  • 10connective tissue
  • 3eye
Project
  • 561AMP
Genome assembly (visualization)
  • 555GRCh38
  • 493hg19
Lab
  • 561AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

561 results

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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
heart718
brain614
tibial artery182
muscle of leg613
muscle of arm17
layer of hippocampus16
pancreas1321
ascending aorta131
endocrine pancreas14
caudate nucleus121
spleen121
temporal lobe13
angular gyrus12
heart right ventricle111
thoracic aorta12
aorta11
middle frontal area 4611
renal cortex interstitium11
substantia nigra11
germinal matrix10
renal pelvis10
right kidney10
left kidney9
right atrium auricular region72
right lobe of liver711
cingulate gyrus6
coronary artery32
omental fat pad32
right cardiac atrium5
left renal cortex interstitium4
left renal pelvis4
right renal pelvis4
frontal cortex21
retina3
right renal cortex interstitium3
subcutaneous adipose tissue21
adipose tissue11
cerebellum (Hemisphere)11
islet of Langerhans11
Ammon's horn1
cerebellar cortex1
forelimb muscle1
globus pallidus1
hindlimb muscle1
inferior parietal cortex1
left cardiac atrium1
medulla oblongata1
midbrain1
middle frontal gyrus1
occipital lobe1
pons1
putamen1
superior temporal gyrus1
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