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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 377ChIP-seq
  • 177DNase-seq
  • 4FAIRE-seq
  • 3ATAC-seq
Assay category
  • 377DNA binding
  • 184DNA accessibility
Target of assay
  • 312histone
  • 312histone modification
  • 204broad histone mark
  • 108narrow histone mark
  • 65transcription factor
  • 20RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 163June, 2019
  • 93May, 2019
  • 64April, 2019
  • 57November, 2017
  • 47October, 2019
  • 45October, 2018
  • 36December, 2017
  • 22August, 2017
  • 17November, 2018
  • 6January, 2019
  • 6October, 2017
  • 3December, 2018
  • 2July, 2019
Available data
  • 1907bam
  • 1772bigWig
  • 1076tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 555Homo sapiens
Biosample type
  • 561tissue
  • 355cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 116brain
  • 88heart
  • 87kidney
  • 84limb
  • 62blood vessel
  • 62pancreas
  • 62vasculature
  • 49liver
  • 38musculature of body
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 10adipose tissue
  • 10connective tissue
  • 3eye
Project
  • 561AMP
Genome assembly (visualization)
  • 555GRCh38
  • 493hg19
Lab
  • 561AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

561 results

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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
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