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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
746
total RNA-seq
526
ChIP-seq
174
DNase-seq
22
ATAC-seq
16
WGBS
13
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
765
Transcription
526
DNA binding
200
DNA accessibility
16
DNA methylation
Target of assay
472
histone
472
histone modification
240
broad histone mark
232
narrow histone mark
54
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
Date released
444
February, 2021
163
June, 2019
160
August, 2017
154
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
57
November, 2017
56
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
19
November, 2019
16
November, 2018
14
October, 2017
10
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1619
bam
1507
bigWig
921
tsv
871
bed narrowPeak
512
bigBed narrowPeak
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1501
Homo sapiens
Biosample type
1507
tissue
602
primary cell
242
in vitro differentiated cells
190
cell line
3
stem cell
Organ
481
connective tissue
423
adipose tissue
373
pancreas
liver
202
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1505
AMP
2
T1D
Genome assembly (visualization)
1475
GRCh38
1382
hg19
Lab
1466
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bedgraph
organ_slims!
gonad
liver
BIOSAMPLE
ASSAY
1507 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
29
1
3
6
1
bone tissue
58
left cardiac atrium
40
1
body of pancreas
2
26
4
4
2
2
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