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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
714
total RNA-seq
553
ChIP-seq
42
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
1
DNase-seq
Assay category
736
Transcription
553
DNA binding
47
DNA accessibility
16
DNA methylation
Target of assay
460
histone modification
459
histone
233
broad histone mark
226
narrow histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
May, 2020
156
October, 2019
152
August, 2017
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
51
November, 2017
45
October, 2018
40
May, 2024
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
14
November, 2018
11
March, 2020
10
October, 2017
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1676
bam
1564
bigWig
957
bed narrowPeak
895
tsv
561
bigBed narrowPeak
377
fastq
bed broadPeak
205
bed bed3+
188
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1352
Homo sapiens
Biosample type
1352
tissue
458
cell line
303
primary cell
169
in vitro differentiated cells
3
stem cell
Organ
478
connective tissue
420
adipose tissue
318
pancreas
166
brain
128
heart
92
liver
65
blood vessel
65
vasculature
58
bone element
55
limb
29
nerve
23
artery
23
kidney
15
spleen
12
musculature of body
1
pituitary gland
Project
1350
AMP
2
T1D
Genome assembly (visualization)
1321
GRCh38
1243
hg19
Lab
1292
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
month_released!
May, 2020
May, 2021
BIOSAMPLE
ASSAY
1352 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
224
23
2
6
1
1
liver
4
55
20
1
bone tissue
58
left cardiac atrium
40
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