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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
463
ChIP-seq
322
total RNA-seq
167
DNase-seq
33
ATAC-seq
16
small RNA-seq
8
WGBS
2
FAIRE-seq
Assay category
463
DNA binding
338
Transcription
202
DNA accessibility
8
DNA methylation
Target of assay
449
histone
449
histone modification
240
narrow histone mark
209
broad histone mark
14
transcription factor
12
RNA binding protein
Date released
February, 2021
170
May, 2020
163
June, 2019
160
October, 2019
114
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
40
May, 2024
May, 2021
20
August, 2017
20
May, 2022
19
November, 2019
14
October, 2018
11
March, 2020
2
January, 2018
Available data
1417
bam
1290
bigWig
976
bed narrowPeak
586
tsv
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1011
Homo sapiens
Biosample type
1011
tissue
205
primary cell
62
cell line
31
in vitro differentiated cells
Organ
204
liver
193
brain
167
pancreas
155
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
57
musculature of body
31
nerve
27
artery
18
ureter
14
adipose tissue
14
connective tissue
3
eye
1
pituitary gland
Project
1009
AMP
2
T1D
Genome assembly (visualization)
953
GRCh38
895
hg19
Lab
951
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
month_released!
February, 2021
May, 2021
BIOSAMPLE
ASSAY
1011 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
liver
32
147
20
1
islet of Langerhans
8
133
2
left cardiac atrium
40
1
heart left ventricle
29
3
3
2
2
heart
12
4
18
1
1
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