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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
615
ChIP-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
14
DNase-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
615
DNA binding
61
DNA accessibility
16
DNA methylation
Target of assay
522
histone modification
521
histone
268
narrow histone mark
253
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
178
August, 2017
170
May, 2020
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1744
bam
1609
bigWig
1076
tsv
821
bed narrowPeak
398
bigBed narrowPeak
377
fastq
238
tagAlign
157
txt
64
xls
50
bed broadPeak
42
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1603
Homo sapiens
Biosample type
1609
tissue
565
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
369
pancreas
265
liver
177
brain
130
heart
67
blood vessel
67
vasculature
59
limb
58
bone element
31
nerve
25
artery
25
musculature of body
23
kidney
16
spleen
1
pituitary gland
Project
1607
AMP
2
T1D
Genome assembly (visualization)
1549
GRCh38
1500
hg19
Lab
1548
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
ibed
month_released!
June, 2019
organ_slims!
pericardium
BIOSAMPLE
ASSAY
1609 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
29
3
1
6
1
liver
147
82
20
1
2
bone tissue
58
left cardiac atrium
40
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