Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
477
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
477
DNA binding
224
DNA accessibility
16
DNA methylation
Target of assay
403
histone modification
402
histone
224
narrow histone mark
178
broad histone mark
74
transcription factor
12
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
178
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1718
bam
1634
bigWig
1076
tsv
846
bed narrowPeak
423
bigBed narrowPeak
319
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
0
ibed
Organism
1628
Homo sapiens
Biosample type
1634
tissue
607
primary cell
522
cell line
261
in vitro differentiated cells
3
stem cell
Organ
476
connective tissue
418
adipose tissue
332
pancreas
265
liver
177
brain
142
heart
91
kidney
85
limb
58
bone element
51
musculature of body
31
blood vessel
31
nerve
31
vasculature
24
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1632
AMP
2
T1D
Genome assembly (visualization)
1575
GRCh38
1509
hg19
Lab
1573
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2019
October, 2018
BIOSAMPLE
ASSAY
1634 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
29
1
3
6
1
liver
147
82
2
20
1
bone tissue
58
left cardiac atrium
40
1
+ See 130 more…
See all biosamples
Download