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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
890
total RNA-seq
477
ChIP-seq
150
DNase-seq
41
ATAC-seq
16
WGBS
12
small RNA-seq
6
single cell RNA-seq
3
FAIRE-seq
Assay category
908
Transcription
477
DNA binding
194
DNA accessibility
16
DNA methylation
Target of assay
384
histone modification
383
histone
208
broad histone mark
175
narrow histone mark
93
transcription factor
control
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
203
August, 2017
170
May, 2020
138
June, 2019
116
July, 2018
84
October, 2019
68
May, 2019
65
April, 2019
53
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
21
November, 2018
20
May, 2022
19
November, 2019
11
March, 2020
7
October, 2017
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1570
bigWig
1538
bam
1053
tsv
792
bed narrowPeak
445
bigBed narrowPeak
300
fastq
177
bed broadPeak
175
bed bed3+
157
txt
149
bigBed broadPeak
87
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
1589
Homo sapiens
Biosample type
1595
tissue
589
primary cell
509
cell line
271
in vitro differentiated cells
3
stem cell
Organ
487
connective tissue
429
adipose tissue
375
pancreas
282
liver
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1593
AMP
2
T1D
Genome assembly (visualization)
1512
GRCh38
1508
hg19
Lab
1534
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
brain
target.investigated_as!
control
BIOSAMPLE
ASSAY
1595 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
31
1
3
6
1
liver
147
99
2
20
1
bone tissue
58
left cardiac atrium
40
1
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