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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
683
ChIP-seq
443
total RNA-seq
175
DNase-seq
39
ATAC-seq
14
WGBS
14
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
683
DNA binding
463
Transcription
218
DNA accessibility
14
DNA methylation
Target of assay
556
histone modification
555
histone
281
narrow histone mark
274
broad histone mark
76
transcription factor
51
control
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
193
May, 2020
187
August, 2017
168
October, 2019
162
June, 2019
116
July, 2018
93
May, 2019
78
November, 2017
65
April, 2019
53
July, 2019
40
May, 2024
40
October, 2018
38
May, 2021
36
December, 2017
22
November, 2018
21
October, 2017
20
May, 2022
19
November, 2019
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
1
January, 2018
Available data
1409
bam
1291
bigWig
971
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1371
Homo sapiens
Biosample type
1378
tissue
567
primary cell
525
cell line
210
in vitro differentiated cells
3
stem cell
Organ
connective tissue
430
adipose tissue
377
pancreas
308
liver
238
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
59
musculature of body
58
bone element
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1376
AMP
2
T1D
Genome assembly (visualization)
1235
GRCh38
1168
hg19
Lab
1317
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
vein
BIOSAMPLE
ASSAY
1378 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
32
260
1
3
6
1
liver
125
147
2
20
1
left cardiac atrium
40
1
body of pancreas
26
2
4
4
2
2
heart left ventricle
29
3
3
2
2
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