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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
609
ChIP-seq
177
DNase-seq
109
single cell RNA-seq
43
ATAC-seq
19
pCHi-C
16
WGBS
16
small RNA-seq
4
FAIRE-seq
3
snDrop-seq
2
RNA microarray
Assay category
1050
Transcription
609
DNA binding
224
DNA accessibility
16
DNA methylation
Target of assay
516
histone modification
515
histone
266
narrow histone mark
249
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
172
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
99
August, 2021
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
30
March, 2020
25
February, 2020
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
6
April, 2018
6
January, 2019
4
February, 2023
3
December, 2018
2
December, 2019
2
January, 2018
Available data
1900
bam
1766
bigWig
1075
tsv
978
bed narrowPeak
555
bigBed narrowPeak
370
fastq
231
tagAlign
207
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1923
Homo sapiens
Biosample type
1923
tissue
631
primary cell
536
cell line
263
in vitro differentiated cells
7
stem cell
Organ
484
connective tissue
426
adipose tissue
370
pancreas
267
liver
255
heart
216
brain
101
kidney
94
limb
80
blood vessel
80
vasculature
60
musculature of body
58
bone element
32
nerve
31
artery
18
ureter
17
spleen
8
eye
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
thymus
1
urinary bladder
Project
1921
AMP
2
T1D
Genome assembly (visualization)
1706
GRCh38
1641
hg19
Lab
1861
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
audit script error
6
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
thymus
BIOSAMPLE
ASSAY
1923 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
pCHi-C
WGBS
small RNA-seq
FAIRE-seq
snDrop-seq
RNA microarray
tissue
adipose tissue
381
1
2
1
2
islet of Langerhans
261
29
1
6
3
1
liver
147
82
2
20
1
1
left cardiac atrium
40
1
18
bone tissue
58
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