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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
806
total RNA-seq
532
ChIP-seq
176
DNase-seq
41
ATAC-seq
16
small RNA-seq
14
WGBS
6
single cell RNA-seq
3
FAIRE-seq
Assay category
828
Transcription
532
DNA binding
220
DNA accessibility
14
DNA methylation
Target of assay
462
histone
462
histone modification
242
narrow histone mark
220
broad histone mark
70
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1737
bam
1594
bigWig
987
tsv
918
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1594
Homo sapiens
Biosample type
1594
tissue
560
primary cell
522
cell line
211
in vitro differentiated cells
3
stem cell
Organ
464
connective tissue
406
adipose tissue
247
liver
243
pancreas
202
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
44
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1592
AMP
2
T1D
Genome assembly (visualization)
1555
GRCh38
1471
hg19
Lab
1533
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
August, 2020
BIOSAMPLE
ASSAY
1594 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
liver
147
65
2
20
1
islet of Langerhans
171
2
3
6
bone tissue
58
left cardiac atrium
40
1
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