Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
880
total RNA-seq
468
ChIP-seq
173
DNase-seq
38
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
902
Transcription
468
DNA binding
215
DNA accessibility
16
DNA methylation
Target of assay
375
histone modification
374
histone
214
broad histone mark
160
narrow histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
178
August, 2017
170
May, 2020
163
June, 2019
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1712
bam
1601
bigWig
941
tsv
767
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
2
hic
1
bedpe
1
bedpe bed3+
Organism
1595
Homo sapiens
Biosample type
1601
tissue
587
primary cell
473
cell line
231
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
368
pancreas
258
liver
148
heart
126
brain
89
kidney
58
bone element
55
musculature of body
48
blood vessel
48
vasculature
39
limb
18
ureter
16
spleen
6
artery
3
eye
Project
1601
AMP
Genome assembly (visualization)
1544
GRCh38
1476
hg19
Lab
1540
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2021
March, 2020
October, 2019
BIOSAMPLE
ASSAY
1601 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
1
2
islet of Langerhans
260
27
1
1
6
1
liver
145
77
2
20
1
bone tissue
58
left cardiac atrium
40
1
+ See 63 more…
See all biosamples
Download