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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
603
ChIP-seq
413
total RNA-seq
176
DNase-seq
42
ATAC-seq
16
small RNA-seq
14
WGBS
6
single cell RNA-seq
4
FAIRE-seq
Assay category
603
DNA binding
435
Transcription
222
DNA accessibility
14
DNA methylation
Target of assay
516
histone modification
515
histone
266
narrow histone mark
249
broad histone mark
87
transcription factor
27
RNA binding protein
2
chromatin remodeller
Date released
February, 2021
178
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
17
November, 2018
13
October, 2017
11
March, 2020
6
April, 2018
2
January, 2018
Available data
1393
bam
1274
bigWig
962
bed narrowPeak
585
tsv
548
bigBed narrowPeak
353
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
68
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1268
Homo sapiens
Biosample type
1274
tissue
440
primary cell
434
cell line
148
in vitro differentiated cells
3
stem cell
Organ
337
pancreas
265
liver
202
brain
155
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
57
musculature of body
37
adipose tissue
37
connective tissue
31
nerve
27
artery
18
ureter
spleen
3
eye
1
pituitary gland
Project
1272
AMP
2
T1D
Genome assembly (visualization)
1214
GRCh38
1151
hg19
Lab
1213
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
May, 2021
organ_slims!
spleen
BIOSAMPLE
ASSAY
1274 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
29
224
1
3
6
1
liver
82
147
2
20
1
left cardiac atrium
40
1
body of pancreas
26
2
4
4
2
2
heart left ventricle
29
3
3
2
2
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