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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
854
total RNA-seq
596
ChIP-seq
145
DNase-seq
42
ATAC-seq
15
WGBS
15
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
875
Transcription
596
DNA binding
191
DNA accessibility
15
DNA methylation
Target of assay
503
histone modification
502
histone
261
narrow histone mark
241
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
165
August, 2017
160
October, 2019
131
June, 2019
116
July, 2018
87
May, 2019
65
April, 2019
60
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
1
January, 2018
Available data
1825
bam
1677
bigWig
1030
tsv
933
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1671
Homo sapiens
Biosample type
1677
tissue
517
cell line
431
primary cell
170
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
337
pancreas
265
liver
202
brain
155
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1675
AMP
2
T1D
Genome assembly (visualization)
1632
GRCh38
1553
hg19
Lab
1616
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2021
organ_slims!
musculature of body
thymus
BIOSAMPLE
ASSAY
1677 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
224
29
1
3
6
1
liver
147
82
2
20
1
bone tissue
58
left cardiac atrium
40
1
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