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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
891
total RNA-seq
308
ChIP-seq
172
DNase-seq
40
ATAC-seq
16
small RNA-seq
15
WGBS
6
single cell RNA-seq
4
FAIRE-seq
Assay category
913
Transcription
308
DNA binding
216
DNA accessibility
15
DNA methylation
Target of assay
468
histone modification
467
histone
narrow histone mark
217
broad histone mark
90
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
160
June, 2019
152
August, 2017
143
May, 2020
116
July, 2018
57
July, 2019
42
April, 2019
38
May, 2021
37
November, 2017
37
October, 2019
35
May, 2019
34
December, 2017
34
October, 2018
25
May, 2024
23
November, 2018
20
May, 2022
19
November, 2019
13
October, 2017
8
March, 2020
6
April, 2018
4
January, 2019
3
December, 2018
2
January, 2018
Available data
1595
bam
1452
bigWig
1062
tsv
636
bed narrowPeak
409
bigBed narrowPeak
349
fastq
194
bed bed3+
193
bed broadPeak
171
bigBed broadPeak
157
txt
128
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1448
Homo sapiens
Biosample type
1452
tissue
483
primary cell
447
cell line
219
in vitro differentiated cells
2
stem cell
Organ
479
connective tissue
421
adipose tissue
345
pancreas
229
liver
119
heart
99
brain
81
kidney
77
limb
58
bone element
blood vessel
52
vasculature
50
musculature of body
23
nerve
21
artery
18
ureter
14
spleen
3
eye
Project
1452
AMP
Genome assembly (visualization)
1411
GRCh38
1359
hg19
Lab
1406
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2023
organ_slims!
blood vessel
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1452 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
260
17
1
3
6
1
liver
147
48
2
20
1
bone tissue
58
body of pancreas
2
20
4
4
2
2
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