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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
89
total RNA-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
FAIRE-seq
Assay category
115
DNA binding
89
Transcription
4
DNA accessibility
2
DNA methylation
Target of assay
65
histone modification
64
histone
54
transcription factor
36
broad histone mark
28
narrow histone mark
RNA binding protein
2
chromatin remodeller
Date released
444
February, 2021
176
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
89
May, 2019
63
July, 2019
62
April, 2019
57
November, 2017
38
May, 2021
35
May, 2024
34
December, 2017
34
October, 2018
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
219
fastq
214
bam
210
bigWig
99
bed narrowPeak
89
tsv
59
tagAlign
56
bigBed narrowPeak
26
bed broadPeak
24
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
Organism
204
Homo sapiens
Biosample type
210
tissue
76
in vitro differentiated cells
44
primary cell
2
stem cell
Organ
128
pancreas
52
liver
17
adipose tissue
17
connective tissue
13
musculature of body
Project
210
AMP
Genome assembly (visualization)
208
hg19
189
GRCh38
Lab
210
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
25
89
1
1
liver
45
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
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