Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
362
ChIP-seq
159
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
362
DNA binding
206
DNA accessibility
16
DNA methylation
Target of assay
522
histone modification
521
histone
268
narrow histone mark
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
145
August, 2017
145
June, 2019
121
October, 2019
116
July, 2018
63
July, 2019
38
May, 2021
37
May, 2019
33
December, 2017
28
April, 2019
26
October, 2018
23
November, 2018
20
May, 2022
20
May, 2024
20
November, 2017
19
November, 2019
11
March, 2020
9
October, 2017
6
April, 2018
3
December, 2018
2
January, 2018
2
January, 2019
Available data
1667
bam
1501
bigWig
1073
tsv
701
bed narrowPeak
339
bigBed narrowPeak
332
fastq
181
bed bed3+
175
bed broadPeak
162
tagAlign
158
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1499
Homo sapiens
Biosample type
1501
tissue
460
cell line
293
primary cell
209
in vitro differentiated cells
2
stem cell
Organ
481
connective tissue
423
adipose tissue
336
pancreas
252
liver
142
brain
100
heart
81
kidney
58
bone element
57
limb
45
musculature of body
34
blood vessel
34
vasculature
ureter
15
nerve
13
artery
12
spleen
3
eye
1
pituitary gland
Project
1499
AMP
2
T1D
Genome assembly (visualization)
1453
GRCh38
1431
hg19
Lab
1460
AMP-T2D consortium
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
epithelium
ureter
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1501 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
19
1
3
6
1
liver
147
72
2
20
1
bone tissue
58
body of pancreas
2
15
4
4
2
2
+ See 129 more…
See all biosamples
Download