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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
547
total RNA-seq
165
ChIP-seq
28
ATAC-seq
10
DNase-seq
5
small RNA-seq
3
WGBS
Assay category
552
Transcription
165
DNA binding
38
DNA accessibility
3
DNA methylation
Target of assay
106
histone modification
105
histone
59
transcription factor
56
narrow histone mark
49
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
386
February, 2021
170
May, 2020
39
May, 2019
36
December, 2017
35
August, 2017
28
October, 2019
23
July, 2019
20
May, 2022
8
November, 2018
5
October, 2018
4
June, 2019
2
March, 2020
1
January, 2018
1
October, 2017
Available data
815
bam
758
bigWig
567
tsv
226
bed narrowPeak
126
fastq
121
bigBed narrowPeak
78
tagAlign
17
bed bed3+
11
bed broadPeak
10
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
758
Homo sapiens
Biosample type
758
tissue
388
cell line
41
primary cell
14
in vitro differentiated cells
Organ
481
connective tissue
423
adipose tissue
373
pancreas
265
liver
202
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
758
AMP
Genome assembly (visualization)
755
hg19
727
GRCh38
Lab
738
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
758 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
1
2
2
liver
147
82
20
2
1
tibial artery
18
1
2
ascending aorta
1
13
1
thoracic aorta
2
12
1
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