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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
615
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
615
DNA binding
224
DNA accessibility
16
DNA methylation
Target of assay
522
histone modification
521
histone
268
narrow histone mark
253
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
178
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1766
Homo sapiens
Biosample type
1772
tissue
613
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
373
pancreas
265
liver
202
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1770
AMP
2
T1D
Genome assembly (visualization)
1712
GRCh38
1647
hg19
Lab
1711
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
1772 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
29
1
3
6
1
liver
147
82
2
20
1
bone tissue
58
left cardiac atrium
40
1
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