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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
ChIP-seq
97
total RNA-seq
27
ATAC-seq
7
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
1
DNase-seq
Assay category
159
DNA binding
103
Transcription
30
DNA accessibility
10
DNA methylation
Target of assay
61
histone modification
60
histone
53
transcription factor
45
control
39
broad histone mark
21
narrow histone mark
8
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
135
August, 2017
48
December, 2017
35
October, 2018
24
May, 2022
17
November, 2018
16
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
4
September, 2017
2
July, 2018
1
March, 2019
Available data
1467
bam
1349
bigWig
971
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
295
Homo sapiens
Biosample type
427
cell line
409
primary cell
302
tissue
121
in vitro differentiated cells
1
stem cell
Organ
190
pancreas
77
liver
adipose tissue
38
connective tissue
23
spleen
10
brain
2
musculature of body
Project
302
AMP
Genome assembly (visualization)
241
hg19
225
GRCh38
Lab
276
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
cool
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
302 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
7
97
20
6
1
1
liver
64
1
1
body of pancreas
33
4
2
spleen
20
1
2
pancreas
16
2
1
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