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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
1
DNase-seq
Assay category
188
DNA binding
103
Transcription
32
DNA accessibility
13
DNA methylation
Target of assay
66
transcription factor
62
histone modification
61
histone
60
control
39
broad histone mark
22
narrow histone mark
13
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
149
August, 2017
58
October, 2018
48
December, 2017
24
May, 2022
17
November, 2018
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
September, 2017
2
July, 2018
1
March, 2019
Available data
1901
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
329
Homo sapiens
Biosample type
427
cell line
397
primary cell
336
tissue
122
in vitro differentiated cells
1
stem cell
Organ
186
pancreas
77
liver
38
adipose tissue
38
connective tissue
23
spleen
10
brain
2
musculature of body
Project
336
AMP
Genome assembly (visualization)
257
hg19
243
GRCh38
Lab
310
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bed bed3+
month_released!
August, 2020
September, 2017
BIOSAMPLE
ASSAY
336 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
3
97
20
6
1
1
liver
64
1
1
body of pancreas
33
4
2
spleen
20
1
2
pancreas
16
2
1
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