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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
91
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
214
DNA binding
97
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
61
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
175
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
18
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
September, 2017
2
July, 2018
1
March, 2019
Available data
1901
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
bedpe
1
tagAlign bed3+
Organism
358
Homo sapiens
Biosample type
427
cell line
404
primary cell
365
tissue
141
in vitro differentiated cells
4
stem cell
Organ
201
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
365
AMP
Genome assembly (visualization)
292
hg19
278
GRCh38
Lab
345
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe
txt
month_released!
September, 2017
BIOSAMPLE
ASSAY
365 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
22
91
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
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