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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
97
total RNA-seq
29
ATAC-seq
6
single cell RNA-seq
4
WGBS
3
RRBS
1
DNase-seq
1
FAIRE-seq
Assay category
195
DNA binding
103
Transcription
31
DNA accessibility
7
DNA methylation
Target of assay
72
transcription factor
62
control
61
histone modification
60
histone
35
broad histone mark
25
narrow histone mark
15
RNA binding protein
2
chromatin remodeller
Date released
168
August, 2017
58
October, 2018
48
December, 2017
November, 2018
24
May, 2022
9
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1695
bam
1589
bigWig
1068
tsv
816
bed narrowPeak
497
bigBed narrowPeak
351
fastq
200
bed broadPeak
192
bed bed3+
tagAlign
163
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
336
Homo sapiens
Biosample type
396
primary cell
354
cell line
336
tissue
141
in vitro differentiated cells
4
stem cell
Organ
199
pancreas
76
liver
42
adipose tissue
42
connective tissue
15
spleen
2
brain
2
musculature of body
Project
336
AMP
Genome assembly (visualization)
265
hg19
246
GRCh38
Lab
310
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
tagAlign
month_released!
November, 2018
October, 2019
BIOSAMPLE
ASSAY
336 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
28
97
20
6
1
1
liver
63
1
1
body of pancreas
33
4
spleen
14
1
subcutaneous adipose tissue
12
1
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