Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ChIP-seq
97
total RNA-seq
29
ATAC-seq
11
Hi-C
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
221
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
11
3D chromatin structure
Target of assay
79
transcription factor
75
histone modification
74
histone
67
control
45
broad histone mark
29
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
175
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
7
March, 2020
6
April, 2018
6
September, 2017
2
July, 2018
2
March, 2019
2
October, 2019
1
August, 2021
1
November, 2019
Available data
1907
bam
1772
bigWig
1075
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
382
Homo sapiens
Biosample type
429
cell line
415
primary cell
389
tissue
145
in vitro differentiated cells
4
stem cell
Organ
216
pancreas
84
liver
43
adipose tissue
43
connective tissue
24
spleen
13
brain
4
musculature of body
3
heart
1
blood vessel
1
kidney
1
vasculature
Project
389
AMP
Genome assembly (visualization)
306
hg19
281
GRCh38
Lab
361
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
ovary
BIOSAMPLE
ASSAY
389 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
97
20
2
1
6
1
liver
67
1
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
1
2
1
+ See 15 more…
See all biosamples
Download