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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 220ChIP-seq
  • 97total RNA-seq
  • 29ATAC-seq
  • 10DNase-seq
  • 10WGBS
  • 6single cell RNA-seq
  • 3RRBS
  • 2FAIRE-seq
Assay category
  • 220DNA binding
  • 103Transcription
  • 41DNA accessibility
  • 13DNA methylation
Target of assay
  • 79transcription factor
  • 74histone modification
  • 73histone
  • 67control
  • 45broad histone mark
  • 28narrow histone mark
  • 15RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 175August, 2017
  • 58October, 2018
  • 48December, 2017
  • 26November, 2018
  • 24May, 2022
  • 17October, 2017
  • 7December, 2018
  • 7January, 2019
  • 6April, 2018
  • 6September, 2017
  • 2July, 2018
  • 1March, 2019
Available data
  • 1907bam
  • 1772bigWig
  • 1076tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 370Homo sapiens
Biosample type
  • 427cell line
  • 409primary cell
  • 377tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 213pancreas
  • 83liver
  • 43adipose tissue
  • 43connective tissue
  • 24spleen
  • 12brain
  • 2musculature of body
Project
  • 377AMP
Genome assembly (visualization)
  • 294hg19
  • 280GRCh38
Lab
  • 351AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
Audit category:
  • 26missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

377 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans289720161
liver67211
body of pancreas33422
spleen20112
pancreas1621
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