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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
snATAC-seq
Assay category
238
DNA binding
72
Transcription
1
DNA accessibility
Target of assay
186
histone
186
histone modification
110
narrow histone mark
76
broad histone mark
52
control
Date released
89
February, 2021
66
November, 2017
59
August, 2017
57
August, 2021
50
May, 2020
49
October, 2019
14
October, 2017
7
May, 2022
4
February, 2023
Available data
1907
bam
1772
bigWig
1074
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
388
Homo sapiens
Biosample type
395
tissue
100
primary cell
43
in vitro differentiated cells
21
cell line
Organ
118
brain
88
bone element
70
liver
62
kidney
22
pancreas
16
musculature of body
8
adipose tissue
8
connective tissue
4
skeleton
1
pituitary gland
Project
395
AMP
Genome assembly (visualization)
116
GRCh38
106
hg19
Lab
332
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
February, 2018
organ_slims!
intestine
BIOSAMPLE
ASSAY
395 results
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ChIP-seq
RNA microarray
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
bone element
84
liver
70
kidney
49
13
skeletal muscle tissue
15
1
substantia nigra
16
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